Course Material
Find Our Material on Github!
All our materials are located in a GitHub repository, located here.
Day One - Wednesday 13 Feb:
-
Introduction
-
Learning to Use the Shell
- slides
data-shell.zip
- Lachlan's terminal commands
- this is what we entered in to our terminal today
- (Boring) review of terminal commands in a silent video
- Git on your machine
- slides
- Lachlan's terminal commands
- this is what we entered in to our terminal today
Day Two - Thursday 14 Feb:
- Using Git to collaborate
- slides: to be uploaded
- Introduction to
R
Day Three - Friday 15 Feb:
- Intro to
dplyr
andtidyr
- Intro to
ggplot
- OLS regressions in R
- Extra material:
Day Four - Saturday 16 Feb:
- Starting Point
- Rscripts and folder structure for MRW replication
- Where we ended the day
- Adds a
Snakefile
to above to generate all tables and graphs - In class, Lachlan broke the rule to create a table, this fixes it
- Adds a
- Extended version
- Split Snakefiles into multiple subworkflows
- Packrat for version management
- Builds pdf of a paper and slides
- Notes (A Work in Progress tutorial)